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这些模拟让生物通过神经网络或近似衍生物进行学习和成长。通常强调的是学习,而不是自然选择,尽管并不总是如此。
 
这些模拟让生物通过神经网络或近似衍生物进行学习和成长。通常强调的是学习,而不是自然选择,尽管并不总是如此。
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===Complex systems modeling复杂系统建模===
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===复杂系统建模===
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Mathematical models of complex systems are of three types: black-box (phenomenological), white-box (mechanistic, based on the first principles) and grey-box (mixtures of phenomenological and mechanistic models).<ref name="Kalmykov Lev V., Kalmykov Vyacheslav L. Solution">
 
Mathematical models of complex systems are of three types: black-box (phenomenological), white-box (mechanistic, based on the first principles) and grey-box (mixtures of phenomenological and mechanistic models).<ref name="Kalmykov Lev V., Kalmykov Vyacheslav L. Solution">
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复杂系统的数学模型分为三种:黑箱(现象学),白箱(力学,基于第一原理)和灰箱(现象学和力学模型的混合)。在黑箱模型中,基于个体的复杂动态系统机制仍然是个谜。
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[[复杂系统]]的数学模型分为三种:'''黑箱 black-box'''(现象学),'''白箱 White box'''(力学,基于第一原理)和灰箱 grey-box(现象学和力学模型的混合)。在黑箱模型中,基于个体的复杂动态系统机制仍然是个谜。<ref name="Kalmykov Lev V., Kalmykov Vyacheslav L. Solution">Kalmykov, Lev V.; Kalmykov, Vyacheslav L. (2015), "A Solution to the Biodiversity Paradox by Logical Deterministic Cellular Automata", Acta Biotheoretica, 63 (2): 1–19, doi:10.1007/s10441-015-9257-9, PMID 25980478, S2CID 2941481</ref> <ref name="A">Kalmykov, Lev V.; Kalmykov, Vyacheslav L. (2015), "A white-box model of S-shaped and double S-shaped single-species population growth", PeerJ, 3:e948: e948, doi:10.7717/peerj.948, PMC 4451025, PMID 26038717</ref>
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{{Citation
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{{Citation
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{引文
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| last = Kalmykov
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In black-box models, the individual-based (mechanistic) mechanisms of a complex dynamic system remain hidden. [[File:Mathematical models for complex systems.jpg|thumb|Mathematical models for complex systems]] Black-box models are completely nonmechanistic. They are phenomenological and ignore a composition and internal structure of a complex system. We cannot investigate interactions of subsystems of such a non-transparent model. A white-box model of complex dynamic system has ‘transparent walls’ and directly shows underlying mechanisms. All events at micro-, meso- and macro-levels of a dynamic system are directly visible at all stages of its white-box model evolution. In most cases mathematical modelers  use the heavy black-box mathematical methods, which cannot produce mechanistic models of complex dynamic systems. Grey-box models are intermediate and combine black-box and white-box approaches. [[File:Logical deterministic individual-based cellular automata model of single species population growth.gif|thumb|Logical deterministic individual-based cellular automata model of single species population growth]] Creation of a white-box model of complex system is associated with the problem of the necessity of an a priori basic knowledge of the modeling subject. The deterministic logical [[Cellular automaton|cellular automata]] are necessary but not sufficient condition of a white-box model. The second necessary prerequisite of a white-box model is the presence of the physical [[ontology]] of the object under study. The white-box modeling represents an automatic hyper-logical inference from the [[first principle]]s because it is completely based on the deterministic logic and axiomatic theory of the subject. The purpose of the white-box modeling is to derive from the basic axioms a more detailed, more concrete mechanistic knowledge about the dynamics of the object under study. The necessity to formulate an intrinsic [[axiomatic system]] of the subject before creating its white-box model distinguishes the cellular automata models of white-box type from cellular automata models based on arbitrary logical rules. If cellular automata rules have not been formulated from the first principles of the subject, then such a model may have a weak relevance to the real problem.<ref name="Kalmykov Lev V., Kalmykov Vyacheslav L. White-box model" />
 
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最后的卡尔米科夫
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| first = Lev V.
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| first = Lev V.
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第一个列夫 v。
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| last2 = Kalmykov
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| last2 = Kalmykov
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2卡尔米科夫
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| first2 = Vyacheslav L.
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| first2 = Vyacheslav L.
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| first2 Vyacheslav l.
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| title = A Solution to the Biodiversity Paradox by Logical Deterministic Cellular Automata
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| title = A Solution to the Biodiversity Paradox by Logical Deterministic Cellular Automata
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用逻辑确定性细胞自动机解决生物多样性悖论
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| journal = Acta Biotheoretica
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| journal = Acta Biotheoretica
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生物理论学学报
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| volume = 63
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| volume = 63
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第63卷
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| issue = 2
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| issue = 2
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第二期
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| pages = 1–19
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| pages = 1–19
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第1-19页
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| year = 2015
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| year = 2015
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2015年
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| doi = 10.1007/s10441-015-9257-9
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| doi = 10.1007/s10441-015-9257-9
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10.1007 / s10441-015-9257-9
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| pmid = 25980478
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| pmid = 25980478
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25980478
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}}</ref><ref name="Kalmykov Lev V., Kalmykov Vyacheslav L. White-box model">{{Citation
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}}</ref><ref name="Kalmykov Lev V., Kalmykov Vyacheslav L. White-box model">{{Citation
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} / ref name"kalmykov lev v,kalmykov vyacheslav l. white-box model"{ Citation
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| last = Kalmykov
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| last = Kalmykov
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最后的卡尔米科夫
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| first = Lev V.
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| first = Lev V.
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第一个列夫 v。
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| last2 = Kalmykov
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| last2 = Kalmykov
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2卡尔米科夫
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| first2 = Vyacheslav L.
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| first2 = Vyacheslav L.
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| first2 Vyacheslav l.
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| title = A white-box model of S-shaped and double S-shaped single-species population growth
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| title = A white-box model of S-shaped and double S-shaped single-species population growth
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S 形和双 s 形单种群增长的白盒模型
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| journal = PeerJ
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| journal = PeerJ
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2012年3月24日
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| volume = 3:e948
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| volume = 3:e948
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第三卷,第948集
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| pages = e948
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| pages = e948
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第九季,第48集
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| year = 2015
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| year = 2015
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2015年
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| doi = 10.7717/peerj.948
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| doi = 10.7717/peerj.948
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10.7717 / peerj. 948
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| pmid = 26038717
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| pmid = 26038717
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26038717
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| pmc = 4451025
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| pmc = 4451025
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4451025
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}}</ref> In black-box models, the individual-based (mechanistic) mechanisms of a complex dynamic system remain hidden. [[File:Mathematical models for complex systems.jpg|thumb|Mathematical models for complex systems]] Black-box models are completely nonmechanistic. They are phenomenological and ignore a composition and internal structure of a complex system. We cannot investigate interactions of subsystems of such a non-transparent model. A white-box model of complex dynamic system has ‘transparent walls’ and directly shows underlying mechanisms. All events at micro-, meso- and macro-levels of a dynamic system are directly visible at all stages of its white-box model evolution. In most cases mathematical modelers  use the heavy black-box mathematical methods, which cannot produce mechanistic models of complex dynamic systems. Grey-box models are intermediate and combine black-box and white-box approaches. [[File:Logical deterministic individual-based cellular automata model of single species population growth.gif|thumb|Logical deterministic individual-based cellular automata model of single species population growth]] Creation of a white-box model of complex system is associated with the problem of the necessity of an a priori basic knowledge of the modeling subject. The deterministic logical [[Cellular automaton|cellular automata]] are necessary but not sufficient condition of a white-box model. The second necessary prerequisite of a white-box model is the presence of the physical [[ontology]] of the object under study. The white-box modeling represents an automatic hyper-logical inference from the [[first principle]]s because it is completely based on the deterministic logic and axiomatic theory of the subject. The purpose of the white-box modeling is to derive from the basic axioms a more detailed, more concrete mechanistic knowledge about the dynamics of the object under study. The necessity to formulate an intrinsic [[axiomatic system]] of the subject before creating its white-box model distinguishes the cellular automata models of white-box type from cellular automata models based on arbitrary logical rules. If cellular automata rules have not been formulated from the first principles of the subject, then such a model may have a weak relevance to the real problem.<ref name="Kalmykov Lev V., Kalmykov Vyacheslav L. White-box model" />
      
  }}</ref> In black-box models, the individual-based (mechanistic) mechanisms of a complex dynamic system remain hidden. Mathematical models for complex systems Black-box models are completely nonmechanistic. They are phenomenological and ignore a composition and internal structure of a complex system. We cannot investigate interactions of subsystems of such a non-transparent model. A white-box model of complex dynamic system has ‘transparent walls’ and directly shows underlying mechanisms. All events at micro-, meso- and macro-levels of a dynamic system are directly visible at all stages of its white-box model evolution. In most cases mathematical modelers  use the heavy black-box mathematical methods, which cannot produce mechanistic models of complex dynamic systems. Grey-box models are intermediate and combine black-box and white-box approaches. Logical deterministic individual-based cellular automata model of single species population growth Creation of a white-box model of complex system is associated with the problem of the necessity of an a priori basic knowledge of the modeling subject. The deterministic logical cellular automata are necessary but not sufficient condition of a white-box model. The second necessary prerequisite of a white-box model is the presence of the physical ontology of the object under study. The white-box modeling represents an automatic hyper-logical inference from the first principles because it is completely based on the deterministic logic and axiomatic theory of the subject. The purpose of the white-box modeling is to derive from the basic axioms a more detailed, more concrete mechanistic knowledge about the dynamics of the object under study. The necessity to formulate an intrinsic axiomatic system of the subject before creating its white-box model distinguishes the cellular automata models of white-box type from cellular automata models based on arbitrary logical rules. If cellular automata rules have not been formulated from the first principles of the subject, then such a model may have a weak relevance to the real problem.
 
  }}</ref> In black-box models, the individual-based (mechanistic) mechanisms of a complex dynamic system remain hidden. Mathematical models for complex systems Black-box models are completely nonmechanistic. They are phenomenological and ignore a composition and internal structure of a complex system. We cannot investigate interactions of subsystems of such a non-transparent model. A white-box model of complex dynamic system has ‘transparent walls’ and directly shows underlying mechanisms. All events at micro-, meso- and macro-levels of a dynamic system are directly visible at all stages of its white-box model evolution. In most cases mathematical modelers  use the heavy black-box mathematical methods, which cannot produce mechanistic models of complex dynamic systems. Grey-box models are intermediate and combine black-box and white-box approaches. Logical deterministic individual-based cellular automata model of single species population growth Creation of a white-box model of complex system is associated with the problem of the necessity of an a priori basic knowledge of the modeling subject. The deterministic logical cellular automata are necessary but not sufficient condition of a white-box model. The second necessary prerequisite of a white-box model is the presence of the physical ontology of the object under study. The white-box modeling represents an automatic hyper-logical inference from the first principles because it is completely based on the deterministic logic and axiomatic theory of the subject. The purpose of the white-box modeling is to derive from the basic axioms a more detailed, more concrete mechanistic knowledge about the dynamics of the object under study. The necessity to formulate an intrinsic axiomatic system of the subject before creating its white-box model distinguishes the cellular automata models of white-box type from cellular automata models based on arbitrary logical rules. If cellular automata rules have not been formulated from the first principles of the subject, then such a model may have a weak relevance to the real problem.

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